tag:blogger.com,1999:blog-6533996127304587865.post2423298151173725066..comments2023-10-16T21:11:28.700+03:00Comments on Dodecad Ancestry Project: The design of Dodecad v3Dienekeshttp://www.blogger.com/profile/02082684850093948970noreply@blogger.comBlogger13125tag:blogger.com,1999:blog-6533996127304587865.post-17625167261754183232015-06-16T21:43:47.253+03:002015-06-16T21:43:47.253+03:00If possible, I third that request. I am totally l...If possible, I third that request. I am totally lost. I ran the "R" program and here are my results. Now what?<br /><br /> 12 ancestral populations<br /> 166462 total SNPs<br /> 21941 flipped SNPs<br /> 51978 heterozygous SNPs<br /> 0 no-calls<br /> 1654 absent SNPs<br /> 0.990064 genotype rate<br /> mode genomewide<br /> <br /> 1654 SNPs missing (no-call or absent)<br />3823 total iterations<br /> 9.995E-08 final dQ <br /> <br /> ----------------------------<br /> FINAL ADMIXTURE PROPORTIONS:<br /> ----------------------------<br /> <br /> 8.12% East_European <br /> 36.21% West_European <br /> 29.50% Mediterranean <br /> 0.02% Neo_African <br /> 17.21% West_Asian <br /> 0.76% South_Asian <br /> 0.11% Northeast_Asian <br /> 0.15% Southeast_Asian <br /> 0.00% East_African <br /> 6.31% Southwest_Asian <br /> 1.56% Northwest_African <br /> 0.06% Palaeo_African <br /> <br /> CPU time = 326.35 sec<br />Anonymoushttps://www.blogger.com/profile/15915509373851616925noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-88599837532041915172015-05-20T01:21:11.054+03:002015-05-20T01:21:11.054+03:00I second this requestI second this requestAnonymoushttps://www.blogger.com/profile/17611194676361706634noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-74104514831768063322015-03-09T01:06:34.548+02:002015-03-09T01:06:34.548+02:00Is there any documentation for beginners for gedma...Is there any documentation for beginners for gedmatch results?Anitahttps://www.blogger.com/profile/16750721191672174453noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-53974728534158509982014-10-04T18:13:07.950+03:002014-10-04T18:13:07.950+03:00Wow, way over my head.Wow, way over my head.The Dandelion Kidhttps://www.blogger.com/profile/03259580697312248313noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-1739196321138350932014-03-26T07:11:00.318+02:002014-03-26T07:11:00.318+02:00Do people still on reply here? I have a question a...Do people still on reply here? I have a question about Jewish ancestry.Kevin McElroyhttps://www.blogger.com/profile/04492370130205355411noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-76300919543677485292013-06-24T18:45:21.023+03:002013-06-24T18:45:21.023+03:00Regarding the higher S.Asian Score in the Iranian ...Regarding the higher S.Asian Score in the Iranian population. While some of this is certainly be recent, most of this likely reflects admixture acquired through pre-LGM, and likely before there much of the defining variation in Caucasoids. Because West Asians (and especially Iranians) defined the split between S.Asians (and later Europeans) one would expect some residual component. However, Global PCA analysis, inclusive of a good number of populations, does not quite suggest an admixture approaching what is suggestive of the Dodecad V3 results. For S.Asian admixture, I tend to believe in the admixture that is suggestive from the distribution of haplogroup L1, and also more in-line with many-to-most other calculators. Around 4%, in through the north, although southern iran varies between, 6- 12%Unknownhttps://www.blogger.com/profile/11566494589399073241noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-1241346735496846932012-07-17T06:49:01.824+03:002012-07-17T06:49:01.824+03:00Hi, I was wondering could you explain what Palaeo ...Hi, I was wondering could you explain what Palaeo and Neo African means? I'm a little confusedRealisthttps://www.blogger.com/profile/15881181775070986959noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-78467193116538001742011-06-23T09:23:21.532+03:002011-06-23T09:23:21.532+03:00I'd like to see myself on more plots with coor...I'd like to see myself on more plots with coordinates listed.Anonymousnoreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-64400913204008954612011-06-22T19:13:20.198+03:002011-06-22T19:13:20.198+03:00After looking at the fst divergence table I suspec...After looking at the fst divergence table I suspect that the East Eurpean in more "native" than Western European, ie the west European component has more ancestry that only recently diverged. I also think a significant part of the West European came from around the caucuses (just north) relatively recently. <br /><br />The reasons I think this is because W.A. is close to W.A. and because W.A. is closer to W.E. than E.E., which suggests that there was a migration between the two since there further apart geographically. Also Mediterranean is closer to E.E. than to W.E. which further suggests that E.E. is more "native" to Europe like Mediterranean, especially since Mediterranean is somewhat of an isolated population (diverged earlier than other componentsvin the area). And while I think this is a weak indicator I think the fact that Northeast Eurasian is closer to W.E. than E.E. AND W.A. even though the geographic distance is bigger fits with the idea that a significant part of W.E. came from north of the caucasus.princenuadhahttps://www.blogger.com/profile/02165977957244158593noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-28479689648051623892011-06-22T09:09:07.353+03:002011-06-22T09:09:07.353+03:00Hi, I wonder if it is possible to see the variatio...Hi, I wonder if it is possible to see the variation of each admix result in every national group.Maurihttps://www.blogger.com/profile/03670078523265515878noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-29387657547656230092011-06-22T05:22:59.946+03:002011-06-22T05:22:59.946+03:00Where my Ashkenazim at?Where my Ashkenazim at?Joshua Lipsonhttps://www.blogger.com/profile/02315913670679395734noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-38349892008153422162011-06-22T01:34:30.300+03:002011-06-22T01:34:30.300+03:00O_Italian is Other Italian, and that is all due to...O_Italian is Other Italian, and that is all due to a single individual that I am waiting to hear from to see whether he/she has any explanation for these results. I will also carry another data cleanup once I'm done with this, to detect submitted relatives or outliers that likely misreported their ancestry. This is part of the reason why I am not reporting raw averages at this time, as I have not cleaned up all the latest submissions.<br /><br />Part of the (to be continued) involves visually inspecting the population portraits to catch outliers such as the one contributing the "Northeast Asian" in the O_Italian sample.Dodecad Projecthttps://www.blogger.com/profile/10447516703222698752noreply@blogger.comtag:blogger.com,1999:blog-6533996127304587865.post-12287906358039536682011-06-22T01:08:41.533+03:002011-06-22T01:08:41.533+03:00What does O_Italian mean? They have relatively (fo...What does O_Italian mean? They have relatively (for Italians and Europeans in general) significant Mongoloid admixture according to the above analysis.Onur Dincerhttps://www.blogger.com/profile/05041378853428912894noreply@blogger.com